Richard A. Young
Richard A. Young | |
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Born |
Richard Allen Young March 12, 1954 Pittsburgh, PA |
Nationality | American |
Fields | Genetics, Genomics and Molecular Biology |
Institutions | |
Alma mater | |
Notable awards |
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Richard Allen Young (born March 12, 1954) is an American geneticist, a Member of Whitehead Institute, and a professor of biology at the Massachusetts Institute of Technology.[1] He is a pioneer in the systems biology of gene control who has developed genomics technologies and concepts key to understanding gene control in human health and disease. He has served as an advisor to the World Health Organization, the National Institutes of Health, and numerous scientific societies and journals.[1] He is a member of the National Academy of Sciences[1] and Scientific American has recognized him as one of the top 50 leaders in science, technology and business.[2]
Research
Young has made major contributions to the understanding of gene control in human development and disease. He discovered that a small set of human embryonic stem cell master transcription factors form a core regulatory circuitry that controls the gene expression program of these cells.[3] This model provided a foundation for the reprogramming experiments of Shinya Yamanaka.[4] This concept of core regulatory circuitry helps guide current efforts to understand gene control, to develop reprogramming protocols for other human cell types and to understand how gene dysregulation contributes to disease.[5]
Young has introduced the concept of transcriptional amplification and described how much of the gene control program in cancer cells is amplified by oncogenic transcription factors such as c-MYC.[6] According to Young, most genes experience transcription initiation,[7] but it is the control of transcription elongation that plays key roles in cell control in health and disease.[8]
Young discovered that large clusters of gene control elements, called super-enhancers, regulate genes that play prominent roles in cell identity.[9] Furthermore, Young showed that disease-associated human genome variation occurs frequently in these super-enhancers[10] and that cancer cell super-enhancers are especially vulnerable to certain transcriptional drugs.[11]
Young has proposed that control of gene expression occurs within insulated neighborhoods, which are structural DNA loops that contain enhancers and their target genes.[12][13] He has further shown that disruption of these neighborhoods in disease contributes to gene dysregulation.[14]
Selected Publications
- Sigova, AA; Abraham, BJ; Ji, X; Molinie, B; Hannett, NM; Guo, YE; Jangi, M; Giallourakis, CC; Sharp, PA; Young, RA (2015). "Transcription factor trapping by RNA in gene regulatory elements". Science. 350: 978–981. doi:10.1126/science.aad3346. PMID 26516199.
- Dowen, JM; Fan, ZP; Hnisz, D; Ren, G; Abraham, BJ; Zhang, L; Weintraub, BJ; Schujiers, J; Lee, TI; Zhao, K; Young, RA (2014). "Control of cell identity genes occurs in insulated neighborhoods in mammalian chromosomes". Cell. 159: 374–387. doi:10.1016/j.cell.2014.09.030. PMC 4197132. PMID 25303531.
- Whyte, WA; Orlando, DA; Hnisz, D; Abraham, BJ; Lin, CY; Kagey, MH; Rahl, PB; Lee, TI; Young, RA (2013). "Master transcription factors and mediator establish super-enhancers at key cell identity genes". Cell. 153: 307–319. doi:10.1016/j.cell.2013.03.035. PMC 3653129. PMID 23582322.
- Lovén, J; Hoke, HA; Lin, CY; Lau, A; Orlando, DA; Vakoc, CR; Bradner, JE; Lee, TI; Young, RA (2013). "Selective inhibition of tumor oncogenes by disruption of super-enhancers". Cell. 153: 320–334. doi:10.1016/j.cell.2013.03.036. PMC 3760967. PMID 23582323.
- Hnisz, D; Abraham, BJ; Lau, A; Saint-André, V; Sigova, AA; Hoke, HA; Lee, TI; Young, RA (2013). "Super-enhancers in the control of cell identity and disease". Cell. 155: 934–947. doi:10.1016/j.cell.2013.09.053. PMC 3841062. PMID 24119843.
- Lin, CY; Lovén, J; Rahl, PB; Paranal, RM; Burge, CB; Bradner, JB; Lee, TI; Young, RA (2012). "Transcriptional Amplification in Tumor Cells with Elevated c-Myc". Cell. 151: 56–67. doi:10.1016/j.cell.2012.08.026. PMC 3462372. PMID 23021215.
- Young, RA (2011). "Control of the embryonic stem cell state". Cell. 144: 940–54. doi:10.1016/j.cell.2011.01.032. PMC 3099475. PMID 21414485.
- Mullen, AC; Orlando, DA; Newman, JJ; Lovén, J; Kumar, RM; Bilodeau, S; Guenther, MG; DeKoter, R; Young, RA (2011). "Master transcription factors determine the gene targets of the TGF-β pathway". Cell. 147: 565–576. doi:10.1016/j.cell.2011.08.050. PMC 3212730. PMID 22036565.
- Rahl, PB; Lin, CY; Seila, AC; Flynn, RA; McCuine, S; Burge, CB; Sharp, PA; Young, RA (2010). "c-Myc regulates transcriptional pause release". Cell. 141: 432–445. doi:10.1016/j.cell.2010.03.030. PMC 2864022. PMID 20434984.
- Kagey, MH; Newman, JJ; Bilodeau, S; Zhan, Y; van Berkum, NL; Orlando, DA; Ebmeier, CC; Goossens, J; Rahl, PB; Levine, S; Taatjes, DJ; Dekker, J; Young, RA (2010). "Mediator and cohesin connect gene expression and chromatin architecture". Nature. 467: 430–435. doi:10.1038/nature09380. PMC 2953795. PMID 20720539.
- Marson, A; Levine, SS; Cole, MF; Frampton, GM; Brambrink, T; Johnstone, S; Guenther, MG; Johnston, WK; Wernig, M; Newman, JJ; Calabrese, JM; Dennis, LM; Volkert, TL; Gupta, S; Love, J; Hannett, NM; Sharp, PA; Bartel, DP; Jaenisch, R; Young, RA (2008). "Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells". Cell. 134: 521–533. doi:10.1016/j.cell.2008.07.020. PMC 2586071. PMID 18692474.
- Lee, TI; Jenner, RG; Boyer, LA; Guenther, MG; Chevalier, B; Levine, SS; Kumar, RM; Johnstone, SE; Murray, HL; Zucker, JP; Yuan, B; Bell, GW; Herbolsheimer, E; Hannett, NM; Cole, MF; Sun, K; Odom, DT; Volkert, TL; Bartel, DP; Gifford, DK; Melton, DA; Jaenisch, R; Young, RA (2006). "Control of Developmental Regulators by Polycomb in Human Embryonic Stem Cells". Cell. 125: 301–313. doi:10.1016/j.cell.2006.02.043. PMID 16630818.
- Boyer, LA; Lee, TI; Cole, MF; Johnstone, SE; Levine, SS; Zucker, JP; Guenther, MG; Kumar, RM; Murray, HL; Jenner, RG; Melton, DA; Gifford, DK; Jaenisch, R; Young, RA (2005). "Core Transcriptional Regulatory Circuitry in Human Embryonic Stem Cells". Cell. 122: 947–956. doi:10.1016/j.cell.2005.08.020. PMC 3006442. PMID 16153702.
- Lee, TI; Rinaldi, NJ; Robert, F; Odom, DT; Bar-Joseph, Z; Gerber, GK; Hannett, NM; Harbison, CT; Thompson, CM; Simon, I; Zeitlinger, J; Jennings, EG; Murray, HL; Gordon, DB; Ren, B; Wyrick, JJ; Tagne, JB; Volkert, TL; Fraenkel, E; Gifford, DK; Young, RA (2001). "Transcriptional regulatory networks in Saccharomyces cerevisiae". Science. 298: 799–804. doi:10.1126/science.1075090. PMID 12399584.
- Ren, B; Robert, F; Wyrick, JJ; Aparicio, O; Jennings, EG; Simon, I; Zeitlinger, J; Hannett, NM; Kanin, E; Volkert, TL; Wilson, C; Bell, SP; Young, RA (2000). "Genome-wide location and function of DNA-binding proteins". Science. 290: 2306–2309. doi:10.1126/science.290.5500.2306. PMID 11125145.
Other Activities
Young is also an educator, entrepreneur and aviator. He teaches two graduate courses at MIT, "Cell Biology: Structure and Functions of the Nucleus" and "Topics of Mammalian Development and Genetics", and guest lectures at numerous universities and research institutes worldwide.[15][16][17] Young has founded and advised companies in the biotechnology and pharmaceutical industry, and is currently a member of the Board of Directors of Syros Pharmaceuticals. He holds a commercial pilot license and is a member of the Aircraft Owners and Pilots Association.
References
- 1 2 3 "Whitehead Member Richard Young elected to National Academy of Sciences". Whitehead Institute News Office. May 1, 2012. Retrieved 15 October 2015.
- ↑ "Scientific American 50: SA 50 Winners and Contributors". Scientific American. November 12, 2006. Retrieved 15 October 2015.
- ↑ Boyer, LA; Lee, TI; Cole, MF; Johnstone, SE; Levine, SS; Zucker, JP; Guenther, MG; Kumar, RM; Murray, HL; Jenner, RG; Gifford, DK; Melton, DA; Jaenisch, R; Young, RA (23 September 2005). "Core transcriptional regulatory circuitry in human embryonic stem cells.". Cell. 122 (6): 947–56. doi:10.1016/j.cell.2005.08.020. PMC 3006442. PMID 16153702.
- ↑ Takahashi, K; Yamanaka, S (25 August 2006). "Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors.". Cell. 126 (4): 663–76. doi:10.1016/j.cell.2006.07.024. PMID 16904174.
- ↑ Lee, TI; Young, RA (2013). "Transcriptional regulation and its misregulation in disease". Cell. 152 (152): 1237–1251. doi:10.1016/j.cell.2013.02.014. PMC 3640494. PMID 23498934.
- ↑ Lin, CY; Lovén, J; Rahl, PB; Paranal, RM; Burge, CB; Bradner, JE; Lee, TI; Young, RA (28 September 2012). "Transcriptional amplification in tumor cells with elevated c-Myc". Cell. 151 (1): 56–67. doi:10.1016/j.cell.2012.08.026. PMC 3462372. PMID 23021215.
- ↑ Guenther, MG; Levine, SS; Boyer, LA; Jaenisch, R; Young, RA (13 July 2007). "A chromatin landmark and transcription initiation at most promoters in human cells.". Cell. 130 (1): 77–88. doi:10.1016/j.cell.2007.05.042. PMID 17632057.
- ↑ Rahl, PB; Lin, CY; Seila, AC; Flynn, RA; McCuine, S; Burge, CB; Sharp, PA; Young, RA (30 April 2010). "c-Myc regulates transcriptional pause release.". Cell. 141 (3): 432–45. doi:10.1016/j.cell.2010.03.030. PMC 2864022. PMID 20434984.
- ↑ Whyte, WA; Orlando, DA; Hnisz, D; Abraham, BJ; Lin, CY; Kagey, MH; Rahl, PB; Lee, TI; Young, RA (11 April 2013). "Master transcription factors and mediator establish super-enhancers at key cell identity genes.". Cell. 153 (2): 307–19. doi:10.1016/j.cell.2013.03.035. PMC 3653129. PMID 23582322.
- ↑ Hnisz, D; Abraham, BJ; Lau, A; Saint-André, V; Sigova, AA; Hoke, HA; Lee, TI; Young, RA (2013). "Super-enhancers in the control of cell identity and disease". Cell. 155 (155): 934–947. doi:10.1016/j.cell.2013.09.053. PMC 3841062. PMID 24119843.
- ↑ Lovén, J; Hoke, HA; Lin, CY; Lau, A; Orlando, DA; Vakoc, CR; Bradner, JE; Lee, TI; Young, RA (2013). "Selective inhibition of tumor oncogenes by disruption of super-enhancers". Cell. 153: 320–334. doi:10.1016/j.cell.2013.03.036. PMC 3760967. PMID 23582323.
- ↑ Dowen, JM; Fan, ZP; Hnisz, D; Ren, G; Abraham, BJ; Zhang, LN; Weintraub, AS; Schuijers, J; Lee, TI; Zhao, K; Young, RA (9 October 2014). "Control of cell identity genes occurs in insulated neighborhoods in mammalian chromosomes.". Cell. 159 (2): 374–87. PMID 25303531.
- ↑ Ji, X; Dadon, DB; Powell, BE; Fan, ZP; Borges-Rivera, D; Shachar, S; Weintraub, AS; Hnisz, D; Pegoraro, G; Lee, TI; Misteli, T; Jaenisch, R; Young, RA (4 February 2016). "3D Chromosome Regulatory Landscape of Human Pluripotent Cells.". Cell stem cell. 18 (2): 262–75. PMID 26686465.
- ↑ Hnisz, D; Weintraub, AS; Day, DS; Valton, AL; Bak, RO; Li, CH; Goldmann, J; Lajoie, BR; Fan, ZP; Sigova, AA; Reddy, J; Borges-Rivera, D; Lee, TI; Jaenisch, R; Porteus, MH; Dekker, J; Young, RA (25 March 2016). "Activation of proto-oncogenes by disruption of chromosome neighborhoods.". Science (New York, N.Y.). 351 (6280): 1454–8. PMID 26940867.
- ↑ "CSHL Keynote: Dr Richard Young, Whitehead Institute for Biomedical Research Mass. Institute of Tech". Cold Spring Harbor Laboratory. Oct 31, 2013.
- ↑ "Roles for Transcriptional Super-Enhancers in Cell Identity and Disease". NIH Center for Information Technology. November 21, 2013.
- ↑ "CSHL 2015 Symposium Interview Series with Richard Young". Cold Spring Harbor Laboratory. May 30, 2015.